int openOutputFileAppend(string, ofstream&);
int openOutputFileBinaryAppend(string, ofstream&);
int openInputFile(string, ifstream&);
- int openInputFile(string, ifstream&, string); //no error given
+ int openInputFile(string, ifstream&, string); //no error given
+
+ bool checkLocations(string&, string); //filename, inputDir. checks for file in ./, inputdir, default and mothur's exe location. Returns false if cant be found. If found completes name with location
string getline(ifstream&);
string getline(istringstream&);
void gobble(istream&);
bool isTrue(string);
bool isContainingOnlyDigits(string);
bool isNumeric1(string);
+ bool isLabelEquivalent(string, string);
+ string getSimpleLabel(string);
string findEdianness();