added debug flag to mothurOut. added debug parameter to set.dir. added debug code...

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 9ce698be4e1963e6af9abee67673ded3e1743fde..db1a4f1ca4e6c4207a652d05ac20b24157dfa46d 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -140,7 +140,7 @@ class MothurOut {
                int getRandomIndex(int); //highest
 
                int control_pressed;
-               bool executing, runParse, jumble, gui, mothurCalling;
+               bool executing, runParse, jumble, gui, mothurCalling, debug;
                
                //current files - if you add a new type you must edit optionParser->getParameters, get.current command and mothurOut->printCurrentFiles/clearCurrentFiles.
                string getPhylipFile()          { return phylipfile;            }
@@ -225,6 +225,7 @@ class MothurOut {
                        printedHeaders = false;
                        commandInputsConvertError = false;
             mothurCalling = false;
+            debug = false;
                        sharedHeaderMode = "";
                }
                ~MothurOut();