vector<string> binLabelsInFile;
vector<string> currentBinLabels;
string saveNextLabel, argv, sharedHeaderMode;
- bool printedHeaders;
+ bool printedHeaders, commandInputsConvertError;
//functions from mothur.h
//file operations
int readNames(string, map<string, vector<string> >&);
int readNames(string, vector<seqPriorityNode>&, map<string, string>&);
int mothurRemove(string);
+ bool mothurConvert(string, int&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
+ bool mothurConvert(string, float&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
+ bool mothurConvert(string, double&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
//searchs and checks
int getNumChar(string, char);
bool isTrue(string);
bool isContainingOnlyDigits(string);
+ bool isNumeric1(string);
//string manipulation
flowfile = "";
gui = false;
printedHeaders = false;
+ commandInputsConvertError = false;
sharedHeaderMode = "";
}
~MothurOut();