added modify names parameter to set.dir

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 643ecd58a149aebc1ac88f500d4658de98d5e145..845e6dd79fc5a7143b238d48bbc9deb1ae401df6 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -70,7 +70,7 @@ class MothurOut {
                vector<string> binLabelsInFile;
                vector<string> currentBinLabels;
                string saveNextLabel, argv, sharedHeaderMode, groupMode;
-               bool printedHeaders, commandInputsConvertError, changedSeqNames;
+               bool printedHeaders, commandInputsConvertError, changedSeqNames, modifyNames;
                
                //functions from mothur.h
                //file operations
@@ -265,6 +265,7 @@ class MothurOut {
                        sharedHeaderMode = "";
             groupMode = "group";
             changedSeqNames = false;
+            modifyNames = true;
                }
                ~MothurOut();