void mothurOutEndLine(); //writes to cout and the logfile
void mothurOut(string, ofstream&); //writes to the ofstream, cout and the logfile
void mothurOutEndLine(ofstream&); //writes to the ofstream, cout and the logfile
+ void mothurOutJustToScreen(string); //writes to cout
void mothurOutJustToLog(string);
void errorOut(exception&, string, string);
void closeLog();
vector<string> binLabelsInFile;
vector<string> currentBinLabels;
string saveNextLabel, argv, sharedHeaderMode, groupMode;
- bool printedHeaders, commandInputsConvertError, changedSeqNames;
+ bool printedHeaders, commandInputsConvertError, changedSeqNames, modifyNames;
//functions from mothur.h
//file operations
sharedHeaderMode = "";
groupMode = "group";
changedSeqNames = false;
+ modifyNames = true;
}
~MothurOut();