sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index ffdcaf63d704d087eccf27892bf6797765955a0e..5ff0810479ab3b9f0e7e91fd6c3e8f98d0845ebb 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -74,12 +74,14 @@ class MothurOut {
                //functions from mothur.h
                //file operations
         bool dirCheck(string&); //completes path, appends appropriate / or \, makes sure dir is writable.
-               vector<unsigned long long> divideFile(string, int&);
+               vector<unsigned long long> divideFile(string, int&); //divides splitting unevenness by sequence
+        vector<unsigned long long> divideFilePerLine(string, int&); //divides splitting unevenness at line breaks
                int divideFile(string, int&, vector<string>&);
                vector<unsigned long long> setFilePosEachLine(string, int&);
                vector<unsigned long long> setFilePosFasta(string, int&);
                string sortFile(string, string);
                int appendFiles(string, string);
+        int appendFilesWithoutHeaders(string, string);
                int renameFile(string, string); //oldname, newname
                string getFullPathName(string);
         string findProgramPath(string programName);