adding misclassification output file

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index efb3823aa74fb162bc1e1d0090d3af958f89f777..3cf6fa4963672b5d69acb7de389eb266b957ba24 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -93,7 +93,9 @@ class MothurOut {
                string getRootName(string);
                bool isBlank(string);
                int openOutputFile(string, ofstream&);
+        int openOutputFileBinary(string, ofstream&);
                int openOutputFileAppend(string, ofstream&);
+        int openOutputFileBinaryAppend(string, ofstream&);
                int openInputFile(string, ifstream&);
                int openInputFile(string, ifstream&, string); //no error given 
                string getline(ifstream&);
@@ -153,6 +155,7 @@ class MothurOut {
         string makeList(vector<string>&);
         bool isSubset(vector<string>, vector<string>); //bigSet, subset
         int checkName(string&);
+        map<string, vector<string> > parseClasses(string);
                
                //math operation
                int factorial(int num);