adding labels to list file.

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 9987374e6c824cafe4aaf343c319d5bca14f209b..363a7a88041ac97bfd207558fc4fa445af7d442b 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -67,10 +67,12 @@ class MothurOut {
                vector<string> getAllGroups() { sort(namesOfGroups.begin(), namesOfGroups.end()); return namesOfGroups; }
                vector<string> Treenames;
                //map<string, string> names;
-               vector<string> binLabelsInFile;
-               vector<string> currentBinLabels;
+               vector<string> sharedBinLabelsInFile;
+               vector<string> currentSharedBinLabels;
+        vector<string> listBinLabelsInFile;
+        //vector<string> currentListBinLabels;
                string saveNextLabel, argv, sharedHeaderMode, groupMode;
-               bool printedHeaders, commandInputsConvertError, changedSeqNames, modifyNames;
+               bool printedSharedHeaders, printedListHeaders, commandInputsConvertError, changedSeqNames, modifyNames;
                
                //functions from mothur.h
                //file operations
@@ -138,6 +140,8 @@ class MothurOut {
                bool isTrue(string);
                bool isContainingOnlyDigits(string);
                bool isNumeric1(string);
+        bool isLabelEquivalent(string, string);
+        string getSimpleLabel(string);
         string findEdianness();
        
                
@@ -268,7 +272,8 @@ class MothurOut {
             counttablefile = "";
             summaryfile = "";
                        gui = false;
-                       printedHeaders = false;
+                       printedSharedHeaders = false;
+            printedListHeaders = false;
                        commandInputsConvertError = false;
             mothurCalling = false;
             debug = false;