modifications to commands to add headers to list file.

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index db931b5a5e380169c3147ee8b0c9acb4d72f1a00..1caa1fe5814679a86e8026f1ec7a54d228dee44e 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -66,11 +66,11 @@ class MothurOut {
        
                vector<string> getAllGroups() { sort(namesOfGroups.begin(), namesOfGroups.end()); return namesOfGroups; }
                vector<string> Treenames;
-               //map<string, string> names;
-               vector<string> binLabelsInFile;
-               vector<string> currentBinLabels;
+               vector<string> sharedBinLabelsInFile;
+               vector<string> currentSharedBinLabels;
+        vector<string> listBinLabelsInFile;
                string saveNextLabel, argv, sharedHeaderMode, groupMode;
-               bool printedHeaders, commandInputsConvertError, changedSeqNames, modifyNames;
+               bool printedSharedHeaders, printedListHeaders, commandInputsConvertError, changedSeqNames, modifyNames;
                
                //functions from mothur.h
                //file operations
@@ -272,7 +272,8 @@ class MothurOut {
             counttablefile = "";
             summaryfile = "";
                        gui = false;
-                       printedHeaders = false;
+                       printedSharedHeaders = false;
+            printedListHeaders = false;
                        commandInputsConvertError = false;
             mothurCalling = false;
             debug = false;