added count file to get.groups and remove.groups. added shortcut parameter to classif...

[mothur.git] / mothurout.cpp

diff --git a/mothurout.cpp b/mothurout.cpp
index 2debf843f7910e6e0d61c9092cd366f1be5b2161..d9df5a078b425b773611d25b2616e3f66a58bddf 100644 (file)
--- a/mothurout.cpp
+++ b/mothurout.cpp
@@ -2114,6 +2114,32 @@ int MothurOut::getNumChar(string line, char c){
                exit(1);
        }
 }
+//**********************************************************************************************************************
+bool MothurOut::isSubset(vector<string> bigset, vector<string> subset) {
+       try {
+               
+        
+               if (subset.size() > bigset.size()) { return false;  }
+               
+               //check if each guy in suset is also in bigset
+               for (int i = 0; i < subset.size(); i++) {
+                       bool match = false;
+                       for (int j = 0; j < bigset.size(); j++) {
+                               if (subset[i] == bigset[j]) { match = true; break; }
+                       }
+                       
+                       //you have a guy in subset that had no match in bigset
+                       if (match == false) { return false; }
+               }
+               
+               return true;
+        
+       }
+       catch(exception& e) {
+               errorOut(e, "MothurOut", "isSubset");
+               exit(1);
+       }
+}
 /***********************************************************************/
 int MothurOut::mothurRemove(string filename){
        try {