fixed cluster.split bug

[mothur.git] / mothurout.cpp

diff --git a/mothurout.cpp b/mothurout.cpp
index de6da8c217a36a17368be48c21a7116d36a43108..9ec847c81152b3ee0b33742c0d369acb74a4f98a 100644 (file)
--- a/mothurout.cpp
+++ b/mothurout.cpp
@@ -658,6 +658,7 @@ int MothurOut::openInputFile(string fileName, ifstream& fileHandle, string m){
 
                        fileHandle.open(completeFileName.c_str());
                        if(!fileHandle) {
+                               mothurOut("[ERROR]: Could not open " + completeFileName); mothurOutEndLine();
                                return 1;
                        }else {
                                //check for blank file
@@ -801,6 +802,7 @@ void MothurOut::appendFiles(string temp, string filename) {
                //open output file in append mode
                openOutputFileAppend(filename, output);
                int ableToOpen = openInputFile(temp, input, "no error");
+               //int ableToOpen = openInputFile(temp, input);
                
                if (ableToOpen == 0) { //you opened it
                        while(char c = input.get()){
@@ -1038,7 +1040,7 @@ vector<unsigned long int> MothurOut::divideFile(string filename, int& proc) {
 
                //sanity check filePos
                for (int i = 0; i < (filePos.size()-1); i++) {
-                       if (filePos[(i+1)] <= filePos[i]) {  cout << "erasing " << (i+1) << endl; filePos.erase(filePos.begin()+(i+1)); i--; }
+                       if (filePos[(i+1)] <= filePos[i]) {  filePos.erase(filePos.begin()+(i+1)); i--; }
                }
 
                proc = (filePos.size() - 1);