added current as option is lists of file names, processors now outputted with current...

[mothur.git] / mothurout.cpp

diff --git a/mothurout.cpp b/mothurout.cpp
index 65296221759fa879e591bb0967b0f20872106adc..2b06799f3c91f58c3c72ed63c2a6098d0473675e 100644 (file)
--- a/mothurout.cpp
+++ b/mothurout.cpp
@@ -39,6 +39,8 @@ void MothurOut::printCurrentFiles()  {
                if (sharedfile != "")           {  mothurOut("shared=" + sharedfile); mothurOutEndLine();                       }
                if (taxonomyfile != "")         {  mothurOut("taxonomy=" + taxonomyfile); mothurOutEndLine();           }
                if (treefile != "")                     {  mothurOut("tree=" + treefile); mothurOutEndLine();                           }
+               if (flowfile != "")                     {  mothurOut("flow=" + flowfile); mothurOutEndLine();                           }
+               if (processors != "1")          {  mothurOut("processors=" + processors); mothurOutEndLine();           }
                
        }
        catch(exception& e) {
@@ -70,6 +72,8 @@ bool MothurOut::hasCurrentFiles()  {
                if (sharedfile != "")           {  return true;                 }
                if (taxonomyfile != "")         {  return true;                 }
                if (treefile != "")                     {  return true;                 }
+               if (flowfile != "")                     {  return true;                 }
+               if (processors != "1")          {  return true;                 }
                
                return hasCurrent;
                
@@ -101,7 +105,9 @@ void MothurOut::clearCurrentFiles()  {
                sfffile = "";
                oligosfile = "";
                accnosfile = "";
-               taxonomyfile = "";              
+               taxonomyfile = "";      
+               flowfile = "";
+               processors = "1";
        }
        catch(exception& e) {
                errorOut(e, "MothurOut", "clearCurrentFiles");