bug fixes

[mothur.git] / mothurout.cpp

diff --git a/mothurout.cpp b/mothurout.cpp
index 0c3ef3d9cddf5cc90544d9a6d0117882d60db6b6..1231700a42e03b3d733e27141762a6c1e5708f00 100644 (file)
--- a/mothurout.cpp
+++ b/mothurout.cpp
@@ -276,8 +276,9 @@ int MothurOut::openOutputFileAppend(string fileName, ofstream& fileHandle){
 /***********************************************************************/
 void MothurOut::gobble(istream& f){
        try {
+               
                char d;
-               while(isspace(d=f.get()))               {;}
+               while(isspace(d=f.get()))               { ;}
                f.putback(d);
        }
        catch(exception& e) {
@@ -984,7 +985,7 @@ vector<unsigned long int> MothurOut::divideFile(string filename, int& proc) {
                //estimate file breaks
                unsigned long int chunkSize = 0;
                chunkSize = size / proc;
-       
+
                //file to small to divide by processors
                if (chunkSize == 0)  {  proc = 1;       filePos.push_back(size); return filePos;        }
        
@@ -1002,7 +1003,7 @@ vector<unsigned long int> MothurOut::divideFile(string filename, int& proc) {
                           char c = in.get();
                           if (c == '>') {   in.putback(c); newSpot = in.tellg(); break;  }
                        }
-                       
+               
                        //there was not another sequence before the end of the file
                        unsigned long int sanityPos = in.tellg();
 
@@ -1017,7 +1018,7 @@ vector<unsigned long int> MothurOut::divideFile(string filename, int& proc) {
 
                //sanity check filePos
                for (int i = 0; i < (filePos.size()-1); i++) {
-                       if (filePos[(i+1)] <= filePos[i]) {  filePos.erase(filePos.begin()+(i+1)); i--; }
+                       if (filePos[(i+1)] <= filePos[i]) {  cout << "erasing " << (i+1) << endl; filePos.erase(filePos.begin()+(i+1)); i--; }
                }
 
                proc = (filePos.size() - 1);