changes while testing

[mothur.git] / mothurmetastats.h

diff --git a/mothurmetastats.h b/mothurmetastats.h
index d80b68709b7bbd8417a26e47b3b6596d9a4fec77..4d6cf9166816f9f775e97eedc8a3231ec6daecd8 100644 (file)
--- a/mothurmetastats.h
+++ b/mothurmetastats.h
@@ -23,9 +23,12 @@ class MothurMetastats {
        
        private:
                MothurOut* m;
-               int row, column, numPermutations;
+               int row, column, numPermutations, secondGroupingStart;
                double threshold;
-       
+        
+    vector<double> permuted_pvalues(vector< vector<double> >&, vector<double>&, vector< vector<double> >&);
+    vector<double> permute_and_calc_ts(vector< vector<double> >&);
+    
                int start(vector<double>&, int, vector<double>&, vector< vector<double> >&); //Find the initial values for the matrix
                int meanvar(vector<double>&, int, vector<double>&);
                int testp(vector<double>&, vector<double>&, vector<double>&, int, vector<double>&, vector<double>&);