moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / mothurmetastats.h

diff --git a/mothurmetastats.h b/mothurmetastats.h
deleted file mode 100644 (file)
index 4d6cf91..0000000
--- a/mothurmetastats.h
+++ /dev/null
@@ -1,49 +0,0 @@
-#ifndef MOTHUR_METASTATS
-#define MOTHUR_METASTATS
-
-/*
- *  mothurmetastats.h
- *  Mothur
- *
- *  Created by westcott on 7/6/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "mothurout.h"
-
-class MothurMetastats {
-       
-       public:
-               MothurMetastats(double, int); //threshold, numPermutations
-               ~MothurMetastats();
-       
-               int runMetastats(string, vector< vector<double> >&, int); //outputFileName, data, secondGroupingStart
-       
-       private:
-               MothurOut* m;
-               int row, column, numPermutations, secondGroupingStart;
-               double threshold;
-        
-    vector<double> permuted_pvalues(vector< vector<double> >&, vector<double>&, vector< vector<double> >&);
-    vector<double> permute_and_calc_ts(vector< vector<double> >&);
-    
-               int start(vector<double>&, int, vector<double>&, vector< vector<double> >&); //Find the initial values for the matrix
-               int meanvar(vector<double>&, int, vector<double>&);
-               int testp(vector<double>&, vector<double>&, vector<double>&, int, vector<double>&, vector<double>&);
-               int permute_matrix(vector<double>&, vector<double>&, int, vector<double>&, vector<double>&, vector<double>&);
-               int permute_array(vector<int>&);
-               int calc_twosample_ts(vector<double>&, int, vector<double>&, vector<double>&, vector<double>&);
-               double smoothSpline(vector<double>&, vector<double>&, int);
-               vector<double> calc_qvalues(vector<double>&);
-               vector<double> sknot1(double*, int);
-               int nkn(int);
-               int OrderPValues(int, int, vector<double>&, vector<int>&);
-               int swapElements(int, int, vector<double>&, vector<int>&);
-               vector<int> getSequence(int, int, int);
-               
-};
-       
-#endif
-