added distance search method to classify.seqs

[mothur.git] / mothur.cpp

diff --git a/mothur.cpp b/mothur.cpp
index d4177e3368be8d836374e935b9e884d6ff26c5f4..bd7ab728c76d311ffe0dc7dcc052a026cfa6e741 100644 (file)
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -19,9 +19,8 @@ CommandFactory* CommandFactory::_uniqueInstance = 0;
 int main(int argc, char *argv[]){
        try {
                
-               //remove old logfile
-//             string log = "mothur.logFile";
-//             remove(log.c_str());
+               string log = "mothur.logFile";
+               remove(log.c_str());
                
                time_t ltime = time(NULL); /* calendar time */  
                string logFileName = "mothur." + toString(ltime) + ".logfile";
@@ -104,10 +103,11 @@ int main(int argc, char *argv[]){
                string outputDir = mothur->getOutputDir();
                logFileName = outputDir + logFileName;
        
-               delete mothur;
-               
-//             rename(log.c_str(), logFileName.c_str()); //logfile with timestamp
+               //need this because mothur.h makes the logfile, but doesn't know where to put it
+               rename(log.c_str(), logFileName.c_str()); //logfile with timestamp
                
+               delete mothur;
+
                return 0;
        }
        catch(exception& e) {