fixed bug with aligner in database class, worked on chimeras

[mothur.git] / mothur.cpp

diff --git a/mothur.cpp b/mothur.cpp
index 0cd4faf1dcc3eec95d9cc05b39e32980fe88d5c4..9208a25194ff36a252462f830d4a76a4f0d76b32 100644 (file)
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -18,14 +18,13 @@ GlobalData* GlobalData::_uniqueInstance = 0;
 int main(int argc, char *argv[]){
        try {
                
-               system("clear");
-               
                //remove old logfile
                string logFileName = "mothur.logFile";
                remove(logFileName.c_str());
                
                //version
                #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+                       system("clear");
                        #if defined (__APPLE__) || (__MACH__)
                                mothurOutJustToLog("Mac version");
                                mothurOutEndLine(); mothurOutEndLine();
@@ -35,6 +34,7 @@ int main(int argc, char *argv[]){
                        #endif
 
                #else
+                       system("CLS");
                        mothurOutJustToLog("Windows version");
                        mothurOutEndLine(); mothurOutEndLine();
                #endif