chimeras, fix to sabundvector and sharedsabundvector that caused getRabundVector...

[mothur.git] / mothur.cpp

diff --git a/mothur.cpp b/mothur.cpp
index 8203c5716f02122ed77feef18f31428c23148552..7acf3894e150f24a8eaaa5bc72f0e752bab4ecc6 100644 (file)
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -93,12 +93,21 @@ int main(int argc, char *argv[]){
                        input = argv[1];
 
                        if (input[0] == '#') {
+                               mothurOutJustToLog("Script Mode");
+                               mothurOutEndLine(); mothurOutEndLine();
+
                                mothur = new ScriptEngine(argv[0], argv[1]);
                        }else{
+                               mothurOutJustToLog("Batch Mode");
+                               mothurOutEndLine(); mothurOutEndLine();
+                               
                                mothur = new BatchEngine(argv[0], argv[1]);
                        }
                }
                else{
+                       mothurOutJustToLog("Interactive Mode");
+                       mothurOutEndLine(); mothurOutEndLine();
+                       
                        mothur = new InteractEngine(argv[0]);   
                }