1.18.1

[mothur.git] / mothur.cpp

diff --git a/mothur.cpp b/mothur.cpp
index 45be11d8adbb0a74fa5412298e803991f1877fd9..67ede87039d783c71a40a0317d3a1ccbffdc7b97 100644 (file)
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -9,7 +9,6 @@
  
 #include "mothur.h"
 #include "engine.hpp"
-#include "globaldata.hpp"
 #include "mothurout.h"
 
 /**************************************************************************************************/
@@ -168,7 +167,7 @@ int main(int argc, char *argv[]){
  
                if(argc>1){
                        input = argv[1];
-                       m->mothurOut("input = " + input); m->mothurOutEndLine();
+                       //m->mothurOut("input = " + input); m->mothurOutEndLine();
 
                        if (input[0] == '#') {
                                m->mothurOutJustToLog("Script Mode");
@@ -215,6 +214,8 @@ int main(int argc, char *argv[]){
                                
                                if (!m->gui) {
                                        outNewLog << endl << endl << "*********************************************************************************" << endl << endl;
+                               }else {
+                                       outNewLog << endl;
                                }
                                outNewLog.close();