testing mpi

[mothur.git] / mothur.cpp

diff --git a/mothur.cpp b/mothur.cpp
index a3eef76a2766d5ae69c824b0ee4cf4b5e3f14a51..6631489a1f67fa5ba486108c0421d562a8953fa5 100644 (file)
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -12,6 +12,7 @@
 #include "globaldata.hpp"
 #include "mothurout.h"
 
+
 /**************************************************************************************************/
 
 GlobalData* GlobalData::_uniqueInstance = 0;
@@ -99,7 +100,11 @@ int main(int argc, char *argv[]){
                m->mothurOutEndLine();                  
                m->mothurOut("Type 'quit()' to exit program");
                m->mothurOutEndLine();  
-
+               
+               #ifdef USE_MPI
+                       m->mothurOutJustToLog("Using MPI\n");
+                       MPI_Init(&argc, &argv); 
+               #endif
                                
                //srand(54321);
                srand( (unsigned)time( NULL ) );
@@ -130,7 +135,7 @@ int main(int argc, char *argv[]){
                        mothur = new InteractEngine(argv[0]);   
                }
                
-               while(bail == 0)                {       bail = mothur->getInput();                      }
+               while(bail == 0)        {       bail = mothur->getInput();      }
                
                string outputDir = mothur->getOutputDir();
                string newlogFileName = outputDir + logFileName;
@@ -139,7 +144,11 @@ int main(int argc, char *argv[]){
                rename(logFileName.c_str(), newlogFileName.c_str()); //logfile with timestamp
                
                delete mothur;
-
+               
+               #ifdef USE_MPI
+                       MPI_Finalize();
+               #endif
+               
                return 0;
        }
        catch(exception& e) {