added save parameter to align.seqs, chimera commands, classify.seqs, and seq.error...

[mothur.git] / mothur.cpp

diff --git a/mothur.cpp b/mothur.cpp
index b551302646c10b813740516eaa65cc46453b4a1d..5838811ac62648bfbf0b6da18ef715d2010b73c6 100644 (file)
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -10,12 +10,13 @@
 #include "mothur.h"
 #include "engine.hpp"
 #include "mothurout.h"
+#include "referencedb.h"
 
 /**************************************************************************************************/
 
 CommandFactory* CommandFactory::_uniqueInstance = 0;
 MothurOut* MothurOut::_uniqueInstance = 0;
-
+ReferenceDB* ReferenceDB::myInstance = 0;
 /***********************************************************************/
 volatile int ctrlc_pressed = 0;
 void ctrlc_handler ( int sig ) {