changed how we name the make.group groups file, and filter file in filter.seqs, finis...

[mothur.git] / metastatscommand.h

diff --git a/metastatscommand.h b/metastatscommand.h
index 9c9f455b4e8b4f45d309e5453da5c41fbba813d7..1c3f10cf49d915cb243e102ec0a7170f3ba90985 100644 (file)
--- a/metastatscommand.h
+++ b/metastatscommand.h
@@ -26,6 +26,13 @@ public:
        void help();
        
 private:
+       struct linePair {
+               int start;
+               int num;
+               linePair(int i, int j) : start(i), num(j) {}
+       };
+       vector<linePair> lines;
+       
        GlobalData* globaldata;
        GroupMap* designMap;
        ReadOTUFile* read;
@@ -34,13 +41,15 @@ private:
        
        bool abort, allLines, pickedGroups;
        set<string> labels; //holds labels to be used
-       string groups, label, outputDir, inputDir, designfile;
-       vector<string> Groups, outputNames;
-       int iters, g;
+       string groups, label, outputDir, inputDir, designfile, sets;
+       vector<string> Groups, outputNames, Sets;
+       vector< vector<string> > namesOfGroupCombos;
+       int iters, processors;
        float threshold;
        
        int process(vector<SharedRAbundVector*>&);
        int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
+       int driver(int, int, vector<SharedRAbundVector*>&);
 };
 
 #endif