sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / metastatscommand.cpp

diff --git a/metastatscommand.cpp b/metastatscommand.cpp
index 3eaee9652fa230281e47d77bfcf0430b3be4afa5..9dff3543f49efa25037ce7fb3dd9eeeebbe8c787 100644 (file)
--- a/metastatscommand.cpp
+++ b/metastatscommand.cpp
@@ -65,7 +65,7 @@ string MetaStatsCommand::getOutputPattern(string type) {
     try {
         string pattern = "";
         
-        if (type == "metastats") {  pattern = "[filename],[distance],[groups],metastats"; } 
+        if (type == "metastats") {  pattern = "[filename],[distance],[group],metastats"; } 
         else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true;  }
         
         return pattern;
@@ -431,6 +431,9 @@ int MetaStatsCommand::process(vector<SharedRAbundVector*>& thisLookUp){
                     
                     //Close all thread handles and free memory allocations.
                     for(int i=0; i < pDataArray.size(); i++){
+                        if (pDataArray[i]->count != (pDataArray[i]->num)) {
+                            m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->num) + " groups assigned to it, quitting. \n"); m->control_pressed = true; 
+                        }
                         for (int j = 0; j < pDataArray[i]->thisLookUp.size(); j++) {  delete pDataArray[i]->thisLookUp[j];  } 
                         for (int j = 0; j < pDataArray[i]->outputNames.size(); j++) {  
                             outputNames.push_back(pDataArray[i]->outputNames[j]);