added mothurgetpid function. fixed bug with align.seqs related to g++ 4.8 change...

[mothur.git] / mergesfffilecommand.cpp

diff --git a/mergesfffilecommand.cpp b/mergesfffilecommand.cpp
index f417ddebe1d8f69b073102d375ed8a9c6c2ac25b..a7a9c499259ec8f8adb5d02eb3903754590d7d78 100644 (file)
--- a/mergesfffilecommand.cpp
+++ b/mergesfffilecommand.cpp
@@ -220,7 +220,7 @@ int MergeSfffilesCommand::execute(){
                if (outputDir == "") {  thisOutputDir += m->hasPath(outputFile);  }
         variables["[filename]"] = thisOutputDir + m->getSimpleName(outputFile);
                outputFile = getOutputFileName("sff",variables);
-        m->openOutputFile(outputFile, out);
+        m->openOutputFileBinary(outputFile, out);
         outputNames.push_back(outputFile); outputTypes["sff"].push_back(outputFile);
         outputFileHeader = outputFile + ".headers";
         numTotalReads = 0;