merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / mergefilecommand.h

diff --git a/mergefilecommand.h b/mergefilecommand.h
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+#ifndef MERGEFILECOMMAND_H
+#define MERGEFILECOMMAND_H
+
+/*
+ *  mergefilecommand.h
+ *  Mothur
+ *
+ *  Created by Pat Schloss on 6/14/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "command.hpp"
+
+class MergeFileCommand : public Command {
+public:
+       MergeFileCommand(string);
+       ~MergeFileCommand();
+       int execute();
+       void help();    
+
+private:
+       vector<string> fileNames;
+       string outputFileName;
+       int numInputFiles;
+       bool abort;
+};
+
+#endif