fixes while testing

[mothur.git] / mergefilecommand.cpp

diff --git a/mergefilecommand.cpp b/mergefilecommand.cpp
index d431dd32ff17dcef5e267b1e93a47c8fc93b324b..c7e5b65e06b77107251b9f4164f4f722edaaeeb2 100644 (file)
--- a/mergefilecommand.cpp
+++ b/mergefilecommand.cpp
@@ -24,6 +24,7 @@ vector<string> MergeFileCommand::getValidParameters(){
 //**********************************************************************************************************************
 MergeFileCommand::MergeFileCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["merge"] = tempOutNames;