}
string fileList = validParameter.validFile(parameters, "input", false);
- if(fileList == "not found") { cout << "you must enter two or more file names" << endl; abort=true; }
+ if(fileList == "not found") { mothurOut("you must enter two or more file names"); mothurOutEndLine(); abort=true; }
else{ splitAtDash(fileList, fileNames); }
numInputFiles = fileNames.size();
ifstream testFile;
if(numInputFiles == 0){
- cout << "you must enter two or more file names and you entered " << fileNames.size() << " file names" << endl;
+ mothurOut("you must enter two or more file names and you entered " + toString(fileNames.size()) + " file names"); mothurOutEndLine();
abort=true;
}
else{
}
outputFileName = validParameter.validFile(parameters, "output", false);
- if (outputFileName == "not found") { cout << "you must enter an output file name" << endl; abort=true; }
+ if (outputFileName == "not found") { mothurOut("you must enter an output file name"); mothurOutEndLine(); abort=true; }
}
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the MergeFileCommand class Function MergeFileCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ errorOut(e, "MergeFileCommand", "MergeFileCommand");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the MergeFileCommand class function MergeFileCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
}
//**********************************************************************************************************************
return 0;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the BinSeqCommand class Function BinSeqCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ errorOut(e, "MergeFileCommand", "execute");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the BinSeqCommand class function BinSeqCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
-
}
//**********************************************************************************************************************
void MergeFileCommand::help(){
try {
- cout << "The merge.file command..." << endl;
+ mothurOut("The merge.file command..."); mothurOutEndLine();
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the MergeFileCommand class Function help. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ errorOut(e, "MergeFileCommand", "help");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the MergeFileCommand class function help. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
-
}
//**********************************************************************************************************************