working on adding subsampling to dist.shared. fixed bug in phylotype command related...

[mothur.git] / matrixoutputcommand.h

diff --git a/matrixoutputcommand.h b/matrixoutputcommand.h
index dc77bdf067ff194dce8bd2e5fcb8f078a9450dcc..f915dfcda8d7ab88040fcb1e8e2f4bbabf833590 100644 (file)
--- a/matrixoutputcommand.h
+++ b/matrixoutputcommand.h
@@ -96,10 +96,10 @@ private:
        InputData* input;
        vector<SharedRAbundVector*> lookup;
        string exportFileName, output, sharedfile;
-       int numGroups, processors;
+       int numGroups, processors, iters, subsampleSize;
        ofstream out;
 
-       bool abort, allLines;
+       bool abort, allLines, subsample;
        set<string> labels; //holds labels to be used
        string outputFile, calc, groups, label, outputDir;
        vector<string>  Estimators, Groups, outputNames; //holds estimators to be used