added smart distance feature and optimized all commands using line by line processing

[mothur.git] / matrixoutputcommand.h

diff --git a/matrixoutputcommand.h b/matrixoutputcommand.h
index 04d0ccbf8e46145591acca443d37039809da88d0..547b567c62e67c01d2dcce2b4cd573c5ad1c08bc 100644 (file)
--- a/matrixoutputcommand.h
+++ b/matrixoutputcommand.h
@@ -30,6 +30,7 @@ public:
        
 private:
        void printSims(ostream&);
+       void process(vector<SharedRAbundVector*>);
        
        GlobalData* globaldata;
        ReadOTUFile* read;
@@ -41,6 +42,7 @@ private:
        string exportFileName;
        int numGroups;
        ofstream out;
+       
 
 };