forced rarefaction.single to output ending line for all groups. added subsample...

[mothur.git] / matrixoutputcommand.cpp

diff --git a/matrixoutputcommand.cpp b/matrixoutputcommand.cpp
index c879d1b621b871a5f7a9e3dbf48df70a7d928320..87929a4d9f8d8c91998e6e9d9760a22c67c60df0 100644 (file)
--- a/matrixoutputcommand.cpp
+++ b/matrixoutputcommand.cpp
@@ -434,18 +434,18 @@ void MatrixOutputCommand::printSims(ostream& out, vector< vector<double> >& simM
                out << simMatrix.size() << endl;
                
                if (output == "lt") {
-                       for (int m = 0; m < simMatrix.size(); m++)      {
-                               out << lookup[m]->getGroup() << '\t';
-                               for (int n = 0; n < m; n++)     {
-                                       out << simMatrix[m][n] << '\t'; 
+                       for (int b = 0; b < simMatrix.size(); b++)      {
+                               out << lookup[b]->getGroup() << '\t';
+                               for (int n = 0; n < b; n++)     {
+                                       out << simMatrix[b][n] << '\t'; 
                                }
                                out << endl;
                        }
                }else{
-                       for (int m = 0; m < simMatrix.size(); m++)      {
-                               out << lookup[m]->getGroup() << '\t';
-                               for (int n = 0; n < simMatrix[m].size(); n++)   {
-                                       out << simMatrix[m][n] << '\t'; 
+                       for (int b = 0; b < simMatrix.size(); m++)      {
+                               out << lookup[b]->getGroup() << '\t';
+                               for (int n = 0; n < simMatrix[b].size(); n++)   {
+                                       out << simMatrix[b][n] << '\t'; 
                                }
                                out << endl;
                        }