removed read.dist, read.otu, read.tree and globaldata. added current to defaults...

[mothur.git] / mantelcommand.h

diff --git a/mantelcommand.h b/mantelcommand.h
index 0646b294c0a53bd327aca2a256a4eaa9ba45735b..224265bc3539a53e16b322847772b8fe2cdbc280 100644 (file)
--- a/mantelcommand.h
+++ b/mantelcommand.h
@@ -17,13 +17,15 @@ class MantelCommand : public Command {
 public:
        MantelCommand(string);
        MantelCommand();
-       ~MantelCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
+       ~MantelCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "mantel";                                      }
+       string getCommandCategory()             { return "Hypothesis Testing";          }
+       string getHelpString(); 
+       
        int execute();
-       void help();
+       void help() { m->mothurOut(getHelpString()); }
        
 private:
        
@@ -32,7 +34,6 @@ private:
        int iters;
        
        vector<string> outputNames;
-       map<string, vector<string> > outputTypes;
 };