moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / mantelcommand.h

diff --git a/mantelcommand.h b/mantelcommand.h
deleted file mode 100644 (file)
index 0a2c404..0000000
--- a/mantelcommand.h
+++ /dev/null
@@ -1,45 +0,0 @@
-#ifndef MANTELCOMMAND_H
-#define MANTELCOMMAND_H
-
-/*
- *  mantelcommand.h
- *  mothur
- *
- *  Created by westcott on 2/9/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "linearalgebra.h"
-
-class MantelCommand : public Command {
-public:
-       MantelCommand(string);
-       MantelCommand();
-       ~MantelCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "mantel";                                      }
-       string getCommandCategory()             { return "Hypothesis Testing";          }
-       string getHelpString(); 
-       string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Mantel"; }
-       string getDescription()         { return "Mantel’s test for correlation between matrices"; }
-
-       int execute();
-       void help() { m->mothurOut(getHelpString()); }
-       
-private:
-       
-       string phylipfile1, phylipfile2, outputDir, method;
-       bool abort;
-       int iters;
-       
-       vector<string> outputNames;
-};
-
-
-#endif
-
-
-