tie breaker fix to chimera.slayer

[mothur.git] / maligner.h

diff --git a/maligner.h b/maligner.h
index a4c959bb480ae7035b3f74b1f76b5c833bd8138c..6ddd6acebdff359294deda6b4cc1b4c2c5ae788f 100644 (file)
--- a/maligner.h
+++ b/maligner.h
@@ -47,9 +47,10 @@ class Maligner {
                
                vector< vector<score_struct> > buildScoreMatrix(int, int);
                void fillScoreMatrix(vector<vector<score_struct> >&, vector<Sequence*>, int);
-               vector<score_struct> extractHighestPath(vector<vector<score_struct> >);
+               vector<trace_struct> extractHighestPath(vector<vector<score_struct> >);
                vector<trace_struct> mapTraceRegionsToAlignment(vector<score_struct>, vector<Sequence*>);
                string constructChimericSeq(vector<trace_struct>, vector<Sequence*>);
+               string constructAntiChimericSeq(vector<trace_struct>, vector<Sequence*>);
                float computePercentID(string, string);
                string chimeraMaligner(int, DeCalculator*);
                vector<Sequence*> getBlastSeqs(Sequence*, int);