more chimera.slayer debugging

[mothur.git] / maligner.h

diff --git a/maligner.h b/maligner.h
index da270d6ac10c2b43a5ee6100dd9e8c33ea5c71ae..4f5c949a45112ebed570f4f6df46cd60f1aeb23e 100644 (file)
--- a/maligner.h
+++ b/maligner.h
@@ -36,7 +36,7 @@ class Maligner {
                float minDivR, percentIdenticalQueryChimera;
                vector<results> outputResults;
                map<int, int> spotMap;
-               
+               vector<int> unalignedMap;
                vector<Sequence*> minCoverageFilter(vector<Sequence*>);  //removes top matches that do not have minimum coverage with query.
                int computeChimeraPenalty();
                void verticalFilter(vector<Sequence*>);