working on chimeraslayer and found bug in shared command.

[mothur.git] / maligner.cpp

diff --git a/maligner.cpp b/maligner.cpp
index 824a2cc0ce19d3d2a7556c8e58776ea4b2cc9895..c7f9be02054510ef2d7a995139fab5d273f91809 100644 (file)
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -26,12 +26,6 @@ string Maligner::getResults(Sequence* q) {
                //find closest seqs to query in template - returns copies of seqs so trim does not destroy - remember to deallocate
                refSeqs = decalc->findClosest(query, db, numWanted);
                
-               ofstream out;
-               string outFile = "parentsOf" + query->getName();
-               openOutputFile(outFile, out);
-               for (int i = 0; i < refSeqs.size(); i++) {   refSeqs[i]->printSequence(out);    }
-               out.close();
-               
                refSeqs = minCoverageFilter(refSeqs);
                
                if (refSeqs.size() < 2)  {