adding current file class

[mothur.git] / maligner.cpp

diff --git a/maligner.cpp b/maligner.cpp
index 30e993678a92895146ac289f132ab9dc2f7ac73b..7f0cd0a85ffded74edea865c2d2d9378d53d9dd8 100644 (file)
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -551,9 +551,9 @@ vector<Sequence*> Maligner::getBlastSeqs(Sequence* q, int num) {
                }
                
                if (mergedResults.size() < numWanted) { numWanted = mergedResults.size(); }
-//cout << q->getName() <<  endl;               
+//cout << q->getName() << " merged results size = " << mergedResults.size() << '\t' << "numwanted = " << numWanted <<  endl;           
                for (int i = 0; i < numWanted; i++) {
-//cout << db[mergedResults[i]]->getName() << endl;     
+//cout << db[mergedResults[i]]->getName()  << '\t' << mergedResults[i] << endl;        
                        if (db[mergedResults[i]]->getName() != q->getName()) { 
                                Sequence* temp = new Sequence(db[mergedResults[i]]->getName(), db[mergedResults[i]]->getAligned());
                                refResults.push_back(temp);
@@ -561,7 +561,7 @@ vector<Sequence*> Maligner::getBlastSeqs(Sequence* q, int num) {
                        }
 //cout << mergedResults[i] << endl;
                }
-//cout << endl;                
+//cout << "done " << q->getName()  << endl;            
                delete queryRight;
                delete queryLeft;