finished chimeraslayer method and added get.listcount command

[mothur.git] / maligner.cpp

diff --git a/maligner.cpp b/maligner.cpp
index c7f9be02054510ef2d7a995139fab5d273f91809..26ac563032bd93c8f46810d84b1c1a1ceb16c231 100644 (file)
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -16,6 +16,8 @@ Maligner::Maligner(vector<Sequence*> temp, int num, int match, int misMatch, flo
 string Maligner::getResults(Sequence* q) {
        try {
                
+               outputResults.clear();
+               
                //make copy so trimming doesn't destroy query from calling class - remember to deallocate
                query = new Sequence(q->getName(), q->getAligned());
                
@@ -25,7 +27,7 @@ string Maligner::getResults(Sequence* q) {
                
                //find closest seqs to query in template - returns copies of seqs so trim does not destroy - remember to deallocate
                refSeqs = decalc->findClosest(query, db, numWanted);
-               
+       
                refSeqs = minCoverageFilter(refSeqs);
                
                if (refSeqs.size() < 2)  {