blast queryName=templateSeq name bug

[mothur.git] / maligner.cpp

diff --git a/maligner.cpp b/maligner.cpp
index 1fd27f95c850a2f211c5e2034ff988cfee173479..5ea41fcd867d291fe928f096cb7d90e03d4d19d4 100644 (file)
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -727,7 +727,7 @@ vector<Sequence*> Maligner::getBlastSeqs(Sequence* q, int num) {
                        lasti++;                        
                }
                
-               numWanted = seen.size();
+               numWanted = mergedResults.size();
                
                if (mergedResults.size() < numWanted) { numWanted = mergedResults.size(); }
 //cout << q->getName() << " merged results size = " << mergedResults.size() << '\t' << "numwanted = " << numWanted <<  endl;