sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / makegroupcommand.h

diff --git a/makegroupcommand.h b/makegroupcommand.h
index 76435bf2ac7820caa0000098b50fa80a17c6c86e..f86c707d4516160d0dc9cc99243f54bea34d191a 100644 (file)
--- a/makegroupcommand.h
+++ b/makegroupcommand.h
@@ -15,16 +15,27 @@
 class MakeGroupCommand : public Command {
        
 public:
-       MakeGroupCommand(string);       
-       ~MakeGroupCommand();
+       MakeGroupCommand(string);
+       MakeGroupCommand();     
+       ~MakeGroupCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "make.group";  }
+       string getCommandCategory()             { return "General";             }
+       
+       string getHelpString(); 
+    string getOutputPattern(string);   
+       string getCitation() { return "http://www.mothur.org/wiki/Make.group"; }
+       string getDescription()         { return "creates a group file"; }
+
        int execute(); 
-       void help();    
+       void help() { m->mothurOut(getHelpString()); }  
        
 private:
                
-       string fastaFileName, groups, outputDir;
+       string fastaFileName, groups, outputDir, filename, output;
        vector<string> fastaFileNames;
-       vector<string> groupsNames;
+       vector<string> groupsNames, outputNames;
        
        bool abort;
 };