modified trim.seqs to account for primers of different lengths

[mothur.git] / makegroupcommand.h

diff --git a/makegroupcommand.h b/makegroupcommand.h
new file mode 100644 (file)
index 0000000..76435bf
--- /dev/null
+++ b/makegroupcommand.h
@@ -0,0 +1,33 @@
+#ifndef MAKEGROUPCOMMAND_H
+#define MAKEGROUPCOMMAND_H
+
+/*
+ *  makegroupcommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 5/7/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+
+class MakeGroupCommand : public Command {
+       
+public:
+       MakeGroupCommand(string);       
+       ~MakeGroupCommand();
+       int execute(); 
+       void help();    
+       
+private:
+               
+       string fastaFileName, groups, outputDir;
+       vector<string> fastaFileNames;
+       vector<string> groupsNames;
+       
+       bool abort;
+};
+
+#endif
+