modified freq parameter be a percentage of numSeqs, added catchall command - not...

[mothur.git] / makefile

diff --git a/makefile b/makefile
index 7c214754fd27c4fa6a78757fe74be6dc69323a98..de1b77cd47e2134804f1bffc79f4994251f1c863 100644 (file)
--- a/makefile
+++ b/makefile
@@ -148,7 +148,8 @@ mothur : \
                ./helpcommand.o\
                ./makegroupcommand.o\
                ./chopseqscommand.o\
-               ./clearcutcommand.o\\r
+               ./clearcutcommand.o\
+               ./catchallcommand.o\\r
                ./inputdata.o\\r
                ./jackknife.o\\r
                ./kmer.o\\r
@@ -352,7 +353,8 @@ mothur : \
                ./helpcommand.o\
                ./makegroupcommand.o\
                ./chopseqscommand.o\
-               ./clearcutcommand.o\\r
+               ./clearcutcommand.o\
+               ./catchallcommand.o\\r
                ./inputdata.o\\r
                ./jackknife.o\\r
                ./kmer.o\\r
@@ -559,7 +561,8 @@ clean :
                ./helpcommand.o\
                ./makegroupcommand.o\
                ./chopseqscommand.o\
-               ./clearcutcommand.o\\r
+               ./clearcutcommand.o\
+               ./catchallcommand.o\\r
                ./inputdata.o\\r
                ./jackknife.o\\r
                ./kmer.o\\r
@@ -1668,6 +1671,10 @@ install : mothur
 
 # Item # 203 -- clearcutcommand --\r
 ./clearcutcommand.o : clearcutcommand.cpp\r
-       $(CC) $(CC_OPTIONS) clearcutcommand.cpp -c $(INCLUDE) -o ./clearcutcommand.o\r
+       $(CC) $(CC_OPTIONS) clearcutcommand.cpp -c $(INCLUDE) -o ./clearcutcommand.o
+
+# Item # 204 -- catchallcommand --\r
+./catchallcommand.o : catchallcommand.cpp\r
+       $(CC) $(CC_OPTIONS) catchallcommand.cpp -c $(INCLUDE) -o ./catchallcommand.o\r
 \r
 ##### END RUN ####\r