made classifier faster

[mothur.git] / makefile

diff --git a/makefile b/makefile
index 99152863384e31256a81f9e946862c588b2e6c58..5812d4551f9c6cc635f8ed4ee5bde2505a4b18df 100644 (file)
--- a/makefile
+++ b/makefile
@@ -12,7 +12,6 @@
 \r
 CC = mpic++\r
 CC_OPTIONS = -O3\r
-LNK_OPTIONS = \r
 \r
 # if you do not want to use the readline library set to no, default yes.\r
 # make sure you have the library installed\r
@@ -27,7 +26,7 @@ ifeq  ($(strip $(USEREADLINE)),yes)
       -L../readline-6.0\r
 endif\r
 \r
-USEMPI ?= yes\r
+USEMPI ?= no\r
 \r
 ifeq  ($(strip $(USEMPI)),yes)\r
     CC_OPTIONS += -DUSE_MPI\r
@@ -220,7 +219,8 @@ mothur : \
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
-               ./bayesian.o\\r
+               ./bayesian.o\
+               ./rawtrainingdatamaker.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -417,7 +417,8 @@ mothur : \
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
-               ./bayesian.o\\r
+               ./bayesian.o\
+               ./rawtrainingdatamaker.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -617,7 +618,8 @@ clean :
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
-               ./bayesian.o\\r
+               ./bayesian.o\
+               ./rawtrainingdatamaker.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -1620,6 +1622,11 @@ install : mothur
 # Item # 196 -- chimerabellerophoncommand --\r
 ./chimerabellerophoncommand.o : chimerabellerophoncommand.cpp\r
        $(CC) $(CC_OPTIONS) chimerabellerophoncommand.cpp -c $(INCLUDE) -o ./chimerabellerophoncommand.o\r
+
+# Item # 171 -- rawtrainingdatamaker --\r
+./rawtrainingdatamaker.o : rawtrainingdatamaker.cpp\r
+       $(CC) $(CC_OPTIONS) rawtrainingdatamaker.cpp -c $(INCLUDE) -o ./rawtrainingdatamaker.o\r
+\r
 \r
 \r
 ##### END RUN ####\r