working on megastats

[mothur.git] / makefile

diff --git a/makefile b/makefile
index 6f194bb349eacfcdf23424a950db3cf387f17d1e..44f54846d78c405c54f94897f3306417509e6347 100644 (file)
--- a/makefile
+++ b/makefile
@@ -61,6 +61,15 @@ ifeq  ($(strip $(USEMPI)),yes)
     CXXFLAGS += -DUSE_MPI
 endif
 
+# if you want to enable reading and writing of compressed files, set to yes.
+# The default is no.  this may only work on unix-like systems.
+
+USECOMPRESSION ?= no
+
+ifeq  ($(strip $(USECOMPRESSION)),yes)
+  CXXFLAGS += -DUSE_COMPRESSION
+endif
+
 #
 # INCLUDE directories for mothur
 #
@@ -72,13 +81,16 @@ endif
 #
 
 OBJECTS=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
+OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
 
 mothur : $(OBJECTS)
        $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS)
 
 install : mothur
        cp mothur ../Release/mothur
-
+       
+%.o : %.c %.h
+       $(COMPILE.c) $(OUTPUT_OPTION) $<
 %.o : %.cpp %.h
        $(COMPILE.cpp) $(OUTPUT_OPTION) $<
 %.o : %.cpp %.hpp