fixed problem with chimera.slayer realigner

[mothur.git] / makefile

diff --git a/makefile b/makefile
index fdcef2794c06cb81c399376aaf79518246c23aca..3e831124a7cc7a026dcad63df44da4a0674d186b 100644 (file)
--- a/makefile
+++ b/makefile
@@ -153,6 +153,7 @@ mothur : \
                ./splitabundcommand.o\\r
                ./splitmatrix.o\\r
                ./clustersplitcommand.o\\r
+               ./weightedlinkage.o\\r
                ./inputdata.o\\r
                ./jackknife.o\\r
                ./kmer.o\\r
@@ -224,6 +225,7 @@ mothur : \
                ./taxonomyequalizer.o\\r
                ./phylotypecommand.o\\r
                ./classifyseqscommand.o\\r
+               ./classifyotucommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
@@ -361,6 +363,7 @@ mothur : \
                ./splitabundcommand.o\\r
                ./splitmatrix.o\\r
                ./clustersplitcommand.o\\r
+               ./weightedlinkage.o\\r
                ./inputdata.o\\r
                ./jackknife.o\\r
                ./kmer.o\\r
@@ -432,6 +435,7 @@ mothur : \
                ./taxonomyequalizer.o\\r
                ./phylotypecommand.o\\r
                ./classifyseqscommand.o\\r
+               ./classifyotucommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
@@ -572,6 +576,7 @@ clean :
                ./splitabundcommand.o\\r
                ./splitmatrix.o\\r
                ./clustersplitcommand.o\\r
+               ./weightedlinkage.o\\r
                ./inputdata.o\\r
                ./jackknife.o\\r
                ./kmer.o\\r
@@ -643,6 +648,7 @@ clean :
                ./taxonomyequalizer.o\\r
                ./phylotypecommand.o\\r
                ./classifyseqscommand.o\\r
+               ./classifyotucommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
@@ -1691,11 +1697,19 @@ install : mothur
        $(CC) $(CC_OPTIONS) splitabundcommand.cpp -c $(INCLUDE) -o ./splitabundcommand.o\r
        \r
 # Item # 206 -- splitmatrix --\r
-./splitmatrix.o : splitmatrix.o\r
+./splitmatrix.o : splitmatrix.cpp\r
        $(CC) $(CC_OPTIONS) splitmatrix.cpp -c $(INCLUDE) -o ./splitmatrix.o\r
        \r
-# Item # 207 -- splitmatrix --\r
+# Item # 207 -- clustersplit --\r
 ./clustersplitcommand.o : clustersplitcommand.cpp\r
        $(CC) $(CC_OPTIONS) clustersplitcommand.cpp -c $(INCLUDE) -o ./clustersplitcommand.o\r
+       \r
+# Item # 208 -- classifyotu --\r
+./classifyotucommand.o : classifyotucommand.cpp\r
+       $(CC) $(CC_OPTIONS) classifyotucommand.cpp -c $(INCLUDE) -o ./classifyotucommand.o\r
+\r
+# Item # 209 -- weightedlinkage --\r
+./weightedlinkage.o : weightedlinkage.cpp\r
+       $(CC) $(CC_OPTIONS) weightedlinkage.cpp -c $(INCLUDE) -o ./weightedlinkage.o\r
 \r
 ##### END RUN ####\r