fixes while testing 1.33.0

[mothur.git] / makefastqcommand.h

diff --git a/makefastqcommand.h b/makefastqcommand.h
index 1c209aab392f82a06ec5bce2d92811e20286df69..e3e0b70b087b17e5d6299052cb06567e9b7c9f69 100644 (file)
--- a/makefastqcommand.h
+++ b/makefastqcommand.h
@@ -24,7 +24,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "make.fastq";                          }
        string getCommandCategory()             { return "Sequence Processing";         }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "http://www.mothur.org/wiki/Make.fastq"; }
        string getDescription()         { return "creates a fastq file from a fasta and quality file"; }
 
@@ -35,7 +37,7 @@ public:
        
 private:
        
-       string fastafile, qualfile, outputDir;
+       string fastafile, qualfile, outputDir, format;
        bool abort;
        vector<string> outputNames;