fixed bug in phylo.diversity rooting. added filename patterns and create filename...

[mothur.git] / makecontigscommand.h

diff --git a/makecontigscommand.h b/makecontigscommand.h
index 86a8450afaf76ba3be6a167ce8b856a605f09166..d641ec9b26065723ec91eabc70367017ac2f160d 100644 (file)
--- a/makecontigscommand.h
+++ b/makecontigscommand.h
@@ -49,8 +49,9 @@ public:
     string getCommandName()                    { return "make.contigs";                        }
     string getCommandCategory()                { return "Sequence Processing";         } 
     //commmand category choices: Sequence Processing, OTU-Based Approaches, Hypothesis Testing, Phylotype Analysis, General, Clustering and Hidden
-    string getOutputFileNameTag(string, string);
+    
        string getHelpString(); 
+    string getOutputPattern(string);   
     string getCitation() { return "http://www.mothur.org/wiki/Make.contigs"; }
     string getDescription()            { return "description"; }