optimizing classify.seqs calculating of template probabilities.

[mothur.git] / makebiomcommand.h

diff --git a/makebiomcommand.h b/makebiomcommand.h
index 31077aecb64add7041ec1ac0cb3ae9ecf5bba232..8a458fe33a398de607ffe05e48a5950b9368353c 100644 (file)
--- a/makebiomcommand.h
+++ b/makebiomcommand.h
@@ -25,6 +25,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "make.biom";   }
        string getCommandCategory()             { return "General";             }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "http://biom-format.org/documentation/biom_format.html, http://www.mothur.org/wiki/Make.biom"; }
        string getDescription()         { return "creates a biom file"; }
@@ -42,6 +43,7 @@ private:
     
     int getBiom(vector<SharedRAbundVector*>&);
     vector<string> getMetaData(vector<SharedRAbundVector*>&);
+    vector<string> parseTax(string tax, vector<string>& scores);
 };