moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / makebiomcommand.h

diff --git a/makebiomcommand.h b/makebiomcommand.h
deleted file mode 100644 (file)
index 9f80c2e..0000000
--- a/makebiomcommand.h
+++ /dev/null
@@ -1,49 +0,0 @@
-#ifndef Mothur_makebiomcommand_h
-#define Mothur_makebiomcommand_h
-
-//
-//  makebiomcommand.h
-//  Mothur
-//
-//  Created by Sarah Westcott on 4/16/12.
-//  Copyright (c) 2012 Schloss Lab. All rights reserved.
-//
-
-
-#include "command.hpp"
-#include "sharedrabundvector.h"
-#include "inputdata.h"
-
-
-class MakeBiomCommand : public Command {
-       
-public:
-       MakeBiomCommand(string);
-       MakeBiomCommand();      
-       ~MakeBiomCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "make.biom";   }
-       string getCommandCategory()             { return "General";             }
-       string getHelpString(); 
-       string getCitation() { return "http://biom-format.org/documentation/biom_format.html, http://www.mothur.org/wiki/Make.biom"; }
-       string getDescription()         { return "creates a biom file"; }
-    
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-    
-       string sharedfile, contaxonomyfile, groups, outputDir, format, label;
-       vector<string> outputNames, Groups;
-       set<string> labels;
-    
-       bool abort, allLines;
-    
-    int getBiom(vector<SharedRAbundVector*>&);
-    vector<string> getMetaData(vector<SharedRAbundVector*>&);
-    vector<string> parseTax(string tax, vector<string>& scores);
-};
-
-
-#endif