added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / loadlogfilecommand.h

diff --git a/loadlogfilecommand.h b/loadlogfilecommand.h
new file mode 100644 (file)
index 0000000..0fd82a8
--- /dev/null
+++ b/loadlogfilecommand.h
@@ -0,0 +1,45 @@
+#ifndef Mothur_loadlogfilecommand_h
+#define Mothur_loadlogfilecommand_h
+
+//
+//  loadlogfilecommand.h
+//  Mothur
+//
+//  Created by Sarah Westcott on 6/13/12.
+//  Copyright (c) 2012 Schloss Lab. All rights reserved.
+//
+
+
+#include "command.hpp"
+
+/**************************************************************************************************/
+
+class LoadLogfileCommand : public Command {
+public:
+    LoadLogfileCommand(string);
+    LoadLogfileCommand();
+    ~LoadLogfileCommand(){}
+    
+    vector<string> setParameters();
+    string getCommandName()                    { return "load.logfile";                }
+    string getCommandCategory()                { return "General";             } 
+    string getOutputFileNameTag(string, string) { return ""; }
+       string getHelpString(); 
+    string getCitation() { return "http://www.mothur.org/wiki/Load.logfile"; }
+    string getDescription()            { return "extracts current files from a logfile"; }
+    
+    int execute(); 
+    void help() { m->mothurOut(getHelpString()); }     
+    
+private:
+    bool abort;
+    string outputDir, logfile;
+    vector<string> outputNames;
+};
+
+/**************************************************************************************************/
+
+
+
+
+#endif