moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / listvector.hpp

diff --git a/listvector.hpp b/listvector.hpp
deleted file mode 100644 (file)
index dcf01a0..0000000
--- a/listvector.hpp
+++ /dev/null
@@ -1,51 +0,0 @@
-#ifndef LIST_H
-#define LIST_H
-
-#include "datavector.hpp"
-
-/*     DataStructure for a list file.
-       This class is a child to datavector.  It represents OTU information at a certain distance. 
-       A list vector can be converted into and ordervector, rabundvector or sabundvector.
-       Each member of the internal container "data" represents an individual OTU.
-       So data[0] = "a,b,c,d,e,f".
-       example: listvector             =       a,b,c,d,e,f             g,h,i           j,k             l               m  
-                        rabundvector   =       6                               3                       2               1               1
-                        sabundvector   =       2               1               1               0               0               1
-                        ordervector    =       1       1       1       1       1       1       2       2       2       3       3       4       5 */
-
-class ListVector : public DataVector {
-       
-public:
-       ListVector();
-       ListVector(int);
-//     ListVector(const ListVector&);
-       ListVector(string, vector<string>);
-       ListVector(const ListVector& lv) : DataVector(lv.label), data(lv.data), maxRank(lv.maxRank), numBins(lv.numBins), numSeqs(lv.numSeqs){};
-       ListVector(ifstream&);
-       ~ListVector(){};
-       
-       int getNumBins()                                                        {       return numBins;         }
-       int getNumSeqs()                                                        {       return numSeqs;         }
-       int getMaxRank()                                                        {       return maxRank;         }
-
-       void set(int, string);  
-       string get(int);
-       void push_back(string);
-       void resize(int);
-       void clear();
-       int size();
-       void print(ostream&);
-       
-       RAbundVector getRAbundVector();
-       SAbundVector getSAbundVector();
-       OrderVector getOrderVector(map<string,int>*);
-       
-private:
-       vector<string> data;  //data[i] is a list of names of sequences in the ith OTU.
-       int maxRank;
-       int numBins;
-       int numSeqs;
-
-};
-
-#endif